{ "_id": "6ad9ec4c6ed2df98ee98d604", "Package": "JPSurv", "Version": "3.0.20", "Date": "2025-05-15", "Title": "Joinpoint Model for Relative and Cause-Specific Survival", "Authors@R": "c(person(given=\"Angela\", family=\"Mariotto\", role=\"aut\"),\nperson(given=\"Theresa\", family=\"Devasia\", role=\"aut\"),\nperson(given=\"Yongwu\", family=\"Shao\", role=\"aut\"),\nperson(given=\"Jun\", family=\"Luo\", role=\"ctb\"),\nperson(given=\"Daniel\", family=\"Miller\", role=\"ctb\"),\nperson(given=\"Fanni\", family=\"Zhang\", role=\"aut\"),\nperson(given=\"Bill\", family=\"Wheeler\", role=\"cre\", email=\"wheelerb@imsweb.com\"))", "Description": "Contains functions for fitting a joinpoint proportional\nhazards model to relative survival or cause-specific survival\ndata, including estimates of joinpoint years at which survival\ntrends have changed and trend measures in the hazard and\ncumulative survival scale. See Yu et al.(2009)\n.", "License": "GPL (>= 2)", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-22 10:38:04 UTC", "User": "root" }, "Author": "Angela Mariotto [aut], Theresa Devasia [aut], Yongwu Shao\n[aut], Jun Luo [ctb], Daniel Miller [ctb], Fanni Zhang [aut],\nBill Wheeler [cre]", "Maintainer": "Bill Wheeler ", "Repository": "https://wheelerb.r-universe.dev", "Date/Publication": "2025-05-19 14:20:09 UTC", "RemoteUrl": "https://github.com/cran/JPSurv", "RemoteRef": "HEAD", "RemoteSha": "10049edffe7c7fd20f52a286dab2a9b61a278094", "_user": "wheelerb", "_type": "src", "_file": "JPSurv_3.0.20.tar.gz", "_fileid": "https://r2.ropensci.org/319de767a4b24dfa1ecacad68e0d05ba6df0f1704de4d2cd46ee1f0ad911e51b", "_filesize": 1166051, "_sha256": "319de767a4b24dfa1ecacad68e0d05ba6df0f1704de4d2cd46ee1f0ad911e51b", "_expires": "2027-01-30T10:58:19.000Z", "_created": "2026-10-22T10:38:04.000Z", "_published": "2026-10-22T10:58:20.819Z", "_upstream": "https://github.com/cran/JPSurv", "_status": "success", "_maintainer": { "name": "Bill Wheeler", "email": "wheelerb@imsweb.com", "login": "wheelerb", "description": "", "uuid": 33498685 }, "_jobs": [ { "job": 119776866004, "time": 117, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12418309839" }, { "job": 119776866054, "time": 122, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12419238967" }, { "job": 119776866230, "time": 132, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "12420108452" }, { "job": 119776866068, "time": 128, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "12420281774" }, { "job": 119775456244, "time": 202, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "12419970933" }, { "job": 119776866034, "time": 76, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "12419473255" }, { "job": 119776866084, "time": 101, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12419537647" }, { "job": 119776866277, "time": 75, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "12419497671" }, { "job": 119776866552, "time": 90, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12419347548" } ], "_buildurl": "https://github.com/r-universe/wheelerb/actions/runs/39764145735", "_commit": { "id": "10049edffe7c7fd20f52a286dab2a9b61a278094", "author": "Bill Wheeler ", "committer": "cran-robot ", "message": "version 3.0.20\n", "time": 1747664409 }, "_distro": "resolute", "_host": "GitHub-Actions", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "ggplot2", "role": "Imports" }, { "package": "ggrepel", "role": "Imports" }, { "package": "scales", "role": "Imports" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 2, "_contributors": [ { "user": "wheelerb", "count": 1, "uuid": 33498685 } ], "_userbio": { "uuid": 33498685, "type": "user", "name": "wheelerb", "followers": 1 }, "_downloads": { "count": 322, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/JPSurv" }, "_searchresults": 1, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/JPSurv.html", "extra/manual.pdf" ], "_realowner": "wheelerb", "_cranurl": false, "_releases": [ { "version": "1.0.1", "date": "2012-03-07" }, { "version": "3.0.20", "date": "2025-05-19" } ], "_exports": [ "aapc", "aapc.multiints", "dictionary.overview", "download.data", "input.valid", "joinpoint", "joinpoint.choose.cutpoint", "joinpoint.cond", "joinpoint.conditional", "joinpoint.relaxProp", "joinpoint.seerdata", "jp.plot.cond.year", "jp.plot.death", "jp.plot.surv", "Plot.dying.year.annotate", "Plot.surv.int.multiyears", "Plot.surv.year.annotate" ], "_datasets": [ { "name": "breast.example", "title": "Data for examples", "object": "breast.example", "file": "breast.example.rda", "class": [ "data.frame" ], "fields": [ "Page_type", "Age_groups", "Breast_stage", "Year_of_diagnosis_1975", "Interval", "Alive_at_Start", "Died", "Lost_to_Followup", "Observed_Survival_Interval", "Observed_Survival_Cum", "Expected_Survival_Interval", "Expected_Survival_Cum", "Relative_Survival_Interval", "Relative_Survival_Cum", "Observed_SE_Interval", "Observed_SE_Cum", "Relative_SE_Interval", "Relative_SE_Cum" ], "rows": 6898, "table": true, "tojson": true }, { "name": "fit1", "title": "Fitted joinpoint object and subset string", "object": "fit1", "file": "fit1.rda", "class": [ "joinpoint" ], "fields": [], "table": false, "tojson": false }, { "name": "fit2", "title": "Fitted joinpoint object and subset string", "object": "fit2", "file": "fit2.rda", "class": [ "joinpoint" ], "fields": [], "table": false, "tojson": false }, { "name": "fit3", "title": "Fitted joinpoint object and subset string", "object": "fit3", "file": "fit3.rda", "class": [ "joinpoint" ], "fields": [], "table": false, "tojson": false }, { "name": "subsetStr1", "title": "Fitted joinpoint object and subset string", "object": "fit1", "file": "fit1.rda", "class": [ "character" ], "fields": [], "table": false, "tojson": true }, { "name": "subsetStr2", "title": "Fitted joinpoint object and subset string", "object": "fit2", "file": "fit2.rda", "class": [ "character" ], "fields": [], "table": false, "tojson": true }, { "name": "subsetStr3", "title": "Fitted joinpoint object and subset string", "object": "fit3", "file": "fit3.rda", "class": [ "character" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "JPSurv-package", "title": "Joinpoint Model for Relative and Cause-Specific Survival", "topics": [ "JPSurv-package", "JPSurv" ] }, { "page": "aapc", "title": "Trend summary measures for joinpoint relative survival model", "topics": [ "aapc" ] }, { "page": "aapc.multiints", "title": "Trend summary measures for multiple selected intervals", "topics": [ "aapc.multiints" ] }, { "page": "breast.data", "title": "Data for examples", "topics": [ "breast.example" ] }, { "page": "dictionary.overview", "title": "SEERStat Dictionary Overview", "topics": [ "dictionary.overview" ] }, { "page": "download.data", "title": "Combine inputs and outputs", "topics": [ "download.data" ] }, { "page": "fit1", "title": "Fitted joinpoint object and subset string", "topics": [ "fit1", "subsetStr1" ] }, { "page": "fit2", "title": "Fitted joinpoint object and subset string", "topics": [ "fit2", "subsetStr2" ] }, { "page": "fit3", "title": "Fitted joinpoint object and subset string", "topics": [ "fit3", "subsetStr3" ] }, { "page": "input.valid", "title": "Input data validation", "topics": [ "input.valid" ] }, { "page": "joinpoint", "title": "Fitting a join point relative survival model", "topics": [ "joinpoint" ] }, { "page": "joinpoint.choose.cutpoint", "title": "Choose cutpoint from joinpoint.relaxProp results", "topics": [ "joinpoint.choose.cutpoint" ] }, { "page": "joinpoint.cond", "title": "Fitting a join point conditional relative survival model", "topics": [ "joinpoint.cond" ] }, { "page": "joinpoint.conditional", "title": "Fitting a join point conditional relative survival model from the unconditional model", "topics": [ "joinpoint.conditional" ] }, { "page": "joinpoint.relaxProp", "title": "Relaxing the proportionality assumption", "topics": [ "joinpoint.relaxProp" ] }, { "page": "joinpoint.seerdata", "title": "Read in and format SEER*Stat data", "topics": [ "joinpoint.seerdata" ] }, { "page": "jp.plot.cond.year", "title": "Plot of conditional survival versus year at diagnosis", "topics": [ "jp.plot.cond.year" ] }, { "page": "jp.plot.death", "title": "Plot of the annual probability of dying", "topics": [ "jp.plot.death" ] }, { "page": "jp.plot.surv", "title": "Plot of conditional survival versus interval", "topics": [ "jp.plot.surv" ] }, { "page": "plot.dying.year.annotate", "title": "Figure - Percent Change in the Annual Probability of Dying of Cancer by Diagnosis Year", "topics": [ "Plot.dying.year.annotate" ] }, { "page": "plot.surv.int.multiyears", "title": "Figure - Cumulative Survival by Interval", "topics": [ "Plot.surv.int.multiyears" ] }, { "page": "plot.surv.year.annotate", "title": "Figure - Average Change in Cumulative Survival by Diagnosis Year", "topics": [ "Plot.surv.year.annotate" ] } ], "_rundeps": [ "cli", "cpp11", "farver", "ggplot2", "ggrepel", "glue", "gtable", "isoband", "labeling", "lifecycle", "R6", "RColorBrewer", "Rcpp", "rlang", "S7", "scales", "vctrs", "viridisLite", "withr" ], "_score": 1.3010299956639813, "_indexed": true, "_nocasepkg": "jpsurv", "_universes": [ "wheelerb" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "3.0.20", "date": "2026-10-22T10:39:54.000Z", "distro": "resolute", "commit": "10049edffe7c7fd20f52a286dab2a9b61a278094", "fileid": "https://r2.ropensci.org/e44a197ca52e98e39d7cf2212c2621381a6d36e7b71fe2126b1911b5326de5e9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wheelerb/actions/runs/39764145735" }, { "r": "4.6.1", "os": "linux", "version": "3.0.20", "date": "2026-10-22T10:39:51.000Z", "distro": "resolute", "commit": "10049edffe7c7fd20f52a286dab2a9b61a278094", "fileid": "https://r2.ropensci.org/5fcbcdefa221d08d779e07d1d15fff8e3f9598f95d24c1144725784eb35b6e5d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wheelerb/actions/runs/39764145735" }, { "r": "4.5.3", "os": "mac", "version": "3.0.20", "date": "2026-10-22T10:57:14.000Z", "commit": "10049edffe7c7fd20f52a286dab2a9b61a278094", "fileid": "https://r2.ropensci.org/370f3a92ad8ebb6e21694350cd25e2d5bb73cc2a2aef38153d11b58c1058ba9a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wheelerb/actions/runs/39764145735" }, { "r": "4.6.1", "os": "mac", "version": "3.0.20", "date": "2026-10-22T10:49:28.000Z", "commit": "10049edffe7c7fd20f52a286dab2a9b61a278094", "fileid": "https://r2.ropensci.org/9518b9f4642edddd9bdf01a35d5fea9b19f3680f2eafd8ff2acf4a0068ad6113", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wheelerb/actions/runs/39764145735" }, { "r": "4.6.0", "os": "wasm", "version": "3.0.20", "date": "2026-10-22T10:39:44.000Z", "commit": "10049edffe7c7fd20f52a286dab2a9b61a278094", "fileid": "https://r2.ropensci.org/6f58a84a1d41f54cff0e5f0b22f2f16c44d6791990aa8a0a704438d2cb1032a1", "status": "success", "buildurl": "https://github.com/r-universe/wheelerb/actions/runs/39764145735" }, { "r": "4.7.0", "os": "win", "version": "3.0.20", "date": "2026-10-22T10:39:21.000Z", "commit": "10049edffe7c7fd20f52a286dab2a9b61a278094", "fileid": "https://r2.ropensci.org/aefde2df0ccda8957f83dc6e86630a20e8e62d1b5a05e38ca0e962682806023c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wheelerb/actions/runs/39764145735" }, { "r": "4.5.3", "os": "win", "version": "3.0.20", "date": "2026-10-22T10:39:11.000Z", "commit": "10049edffe7c7fd20f52a286dab2a9b61a278094", "fileid": "https://r2.ropensci.org/d20ee86dde8f405c1fab520a4b482d6a0fabb75b1a4c46773ca364308b9825e5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wheelerb/actions/runs/39764145735" }, { "r": "4.6.1", "os": "win", "version": "3.0.20", "date": "2026-10-22T10:39:14.000Z", "commit": "10049edffe7c7fd20f52a286dab2a9b61a278094", "fileid": "https://r2.ropensci.org/58d325f69c2551c0262f811244746d18bb7e4003f7d5ddae5ae5460227fb4aaa", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/wheelerb/actions/runs/39764145735" } ] }