GrafGen - Classification of Helicobacter Pylori Genomes
To classify Helicobacter pylori genomes according to genetic distance from nine reference populations. The nine reference populations are hpgpAfrica, hpgpAfrica-distant, hpgpAfroamerica, hpgpEuroamerica, hpgpMediterranea, hpgpEurope, hpgpEurasia, hpgpAsia, and hpgpAklavik86-like. The vertex populations are Africa, Europe and Asia.
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geneticssoftwaregenomeannotationclassificationcpp
4.18 score 2 scripts 255 downloadsSUITOR - Selecting the number of mutational signatures through cross-validation
An unsupervised cross-validation method to select the optimal number of mutational signatures. A data set of mutational counts is split into training and validation data.Signatures are estimated in the training data and then used to predict the mutations in the validation data.
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geneticssoftwaresomaticmutation
4.00 score 2 scripts 293 downloadsREBET - The subREgion-based BurdEn Test (REBET)
There is an increasing focus to investigate the association between rare variants and diseases. The REBET package implements the subREgion-based BurdEn Test which is a powerful burden test that simultaneously identifies susceptibility loci and sub-regions.
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softwarevariantannotationsnp
4.00 score 2 scripts 353 downloadsINPower - An R package for computing the number of susceptibility SNPs
An R package for computing the number of susceptibility SNPs and power of future studies
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snp
3.60 score 6 scripts 362 downloadsJPSurv - Joinpoint Model for Relative and Cause-Specific Survival
Contains functions for fitting a joinpoint proportional hazards model to relative survival or cause-specific survival data, including estimates of joinpoint years at which survival trends have changed and trend measures in the hazard and cumulative survival scale. See Yu et al.(2009) <doi:10.1111/j.1467-985X.2009.00580.x>.
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1.30 score 2 stars 1 scripts 542 downloads